Package: scShardSplitRef
Title: Reference Genome Splitting for Single-Cell Multiome Data
Version: 0.1.0
Authors@R: c(
    person("Irina", "Kuznetsova", , "irina.kuznetsova@curtin.edu.au", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0001-5411-6063")),
    person("Luke", "Pembleton", , "lpembleton@barenbrug.com.au", role = "aut",
           comment = c(ORCID = "0000-0001-8131-8210")),
    person("Luca", "Curci", , "pasqualeluca.curci@cnr.it", role = "aut",
           comment = c(ORCID = "0000-0002-5780-3029")),
    person("Adam H.", "Sparks", , "adamhsparks@gmail.com", role = "aut",
           comment = c(ORCID = "0000-0002-0061-8359")),
    person("Curtin University", role = c("fnd", "cph"),
           comment = c(ROR = "02n415q13")),
    person("Grains Research and Development Corporation", role = c("fnd", "cph"),
           comment = c("GRDC Project CUR2210-005OPX (AAGI-CU)", ROR = "02xwr1996"))
  )
Description: Splits chromosomes of large-genome species into smaller
        shards that respect the maximum contig size supported by 10x
        Genomics' 'Cell Ranger ARC' reference builder, avoiding breaks
        inside gene bodies, and rewrites the corresponding 'GTF'
        annotation coordinates to match. This enables researchers to
        build custom 'Cell Ranger ARC' references for Multiome 'ATAC'
        and Gene Expression data from genomes that would otherwise
        exceed the tool's chromosome size limits.
License: GPL (>= 3)
Depends: R (>= 4.3.0)
Imports: cli, rlang, stringi, utils, withr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/Needs/build: moodymudskipper/devtag
Config/roxygen2/version: 8.0.0
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE, roclets = c("collate", "namespace",
        "rd", "devtag::dev_roclet"))
Config/pak/sysreqs: libicu-dev
Repository: https://irinavkuznetsova.r-universe.dev
Date/Publication: 2026-08-24 02:04:28 UTC
RemoteUrl: https://github.com/irinavkuznetsova/scshardsplitref
RemoteRef: HEAD
RemoteSha: d7f40d82ec11558005f423873a4471d339c8411d
NeedsCompilation: no
Packaged: 2026-09-23 06:22:31 UTC; root
Author: Irina Kuznetsova [aut, cre] (ORCID:
    <https://orcid.org/0009-0001-5411-6063>),
  Luke Pembleton [aut] (ORCID: <https://orcid.org/0000-0001-8131-8210>),
  Luca Curci [aut] (ORCID: <https://orcid.org/0000-0002-5780-3029>),
  Adam H. Sparks [aut] (ORCID: <https://orcid.org/0000-0002-0061-8359>),
  Curtin University [fnd, cph] (ROR: <https://ror.org/02n415q13>),
  Grains Research and Development Corporation [fnd, cph] (GRDC Project
    CUR2210-005OPX (AAGI-CU), ROR: <https://ror.org/02xwr1996>)
Maintainer: Irina Kuznetsova <irina.kuznetsova@curtin.edu.au>