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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "scShardSplitRef" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'scShardSplitRef: Reference Genome Splitting for Single-Cell Multiome Data'
version: 0.1.0
doi: 10.32614/CRAN.package.scShardSplitRef
abstract: Splits chromosomes of large-genome species into smaller shards that respect
  the maximum contig size supported by 10x Genomics' 'Cell Ranger ARC' reference builder,
  avoiding breaks inside gene bodies, and rewrites the corresponding 'GTF' annotation
  coordinates to match. This enables researchers to build custom 'Cell Ranger ARC'
  references for Multiome 'ATAC' and Gene Expression data from genomes that would
  otherwise exceed the tool's chromosome size limits.
authors:
- family-names: Kuznetsova
  given-names: Irina
  email: irina.kuznetsova@curtin.edu.au
  orcid: https://orcid.org/0009-0001-5411-6063
- family-names: Pembleton
  given-names: Luke
  email: lpembleton@barenbrug.com.au
  orcid: https://orcid.org/0000-0001-8131-8210
- family-names: Curci
  given-names: Luca
  email: pasqualeluca.curci@cnr.it
  orcid: https://orcid.org/0000-0002-5780-3029
- family-names: Sparks
  given-names: Adam H.
  email: adamhsparks@gmail.com
  orcid: https://orcid.org/0000-0002-0061-8359
repository: https://irinavkuznetsova.r-universe.dev
commit: d7f40d82ec11558005f423873a4471d339c8411d
date-released: '2026-08-24'
contact:
- family-names: Kuznetsova
  given-names: Irina
  email: irina.kuznetsova@curtin.edu.au
  orcid: https://orcid.org/0009-0001-5411-6063